Data Statistic

The data integrated in Human IRES Atlas are summarized in the following table.
All data can be downloaded through the download link.
Data Type Category # of deposited items Download
Transcript UCSC Genome Database 53,971 .csv
Gene NCBI Gene 19,879 .csv
Minimal IRES IRESpy, IRESfinder, PatSearch 18,881 .bed zip file
Experimentally-Probed TIS GTI-seq 11,395 .bed zip file
Non-canonical TIS PreTIS 13,900 .bed zip file
uORF 131,612 .bed zip file
ITAF Binding Events FUS (HITS CLIP, brain cells replicate 1) 101,081 .bed zip file
FUS (HITS CLIP, brain cells replicate 2) 111,810 .bed zip file
FUS (HITS CLIP, brain cells replicate 3) 128,439 .bed zip file
FUS (PAR CLIP, HEK293 cells replicate 1) 36,855 .bed zip file
FUS (PAR CLIP, HEK293 cells replicate 2) 23,086 .bed zip file
hnRNPC (iCLIP, HeLa cells) 4,899 .bed zip file
hnRNPL (HITS-CLIP, Jurkat cells in resting state) 8,276 .bed zip file
hnRNPL (HITS-CLIP, CD4(+) cells in resting state) 5,873 .bed zip file
hnRNPL (HITS-CLIP, Jurkat cells in stimulated state) 8,286 .bed zip file
hnRNPL (HITS-CLIP, CD4(+) cells in stimulated state) 8,158 .bed zip file
HuR/ELAVL1 (PAR-CLIP, HeLa cells) 52,719 .bed zip file
HuR/ELAVL1 (CLIP-seq, HEK293 cells) 29,383 .bed zip file
HuR/ELAVL1 (PAR-CLIP, HEK293 cells, Kishore 2011) 32,241 .bed zip file
HuR/ELAVL1 w/ MNase (PAR-CLIP, HEK293 cells, Kishore 2011) 423,411 .bed zip file
HuR/ELAVL1 (PAR-CLIP, HEK293 cells, Mukherjee 2011) 83,362 .bed zip file
NONO_TP53 (PAR-CLIP, HEK293 cells) 806 .bed zip file
TP53_NONO (PAR-CLIP, HEK293 cells) 219 .bed zip file
eIF4A3 (HITS CLIP, Hela cells replicate 1) 867,774 .bed zip file
eIF4A3 (HITS CLIP, Hela cells replicate 2) 500,051 .bed zip file
Ribosome Profiling Scores in RPM Tm-treated HEK293T cells all transcripts .wig zip file
Untreated HEK293T cells all transcripts .wig zip file
Phastcon Conservation Scores all transcripts link
IRES Activity Measurements 39,700 .csv
Sequences with IRES Activity larger than background value .bed zip file
Literature Curated IRES Evidence 659 .bed zip file