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Rank Predictions
Generate & Rank Predictions
Infer Interpretability
Result History
Rank the List of Predicted Structures Based on Functional Interpretability
Predicted Structures:
*
Dot Bracket File Format
Sample structures
*
Or upload a zip file of .ct files:
Sample .zip file (species: Homo sapiens)
CT File Format
Species Under Consideration:
*
Arabidopsis thaliana
Homo sapiens
Mus musculus
Rattus norvegicus
Saccharomyces cerevisiae
Danio rerio
Significance level of functional interpretability:
*
0.05
0.01
0.001
Mail: (Optional)
submit
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Structure File Formats: dot bracket
> (Header)
(Sequence: whitespace is ignored and blank lines are not allowed)
(Structure: Unpaired nucleotides are indicated with the "." To indicate pseudoknots, additional brackets may be used: [], {}, or <>.)
SAMPLE
> sample GGUGCAUGCCGAGGGGCGGUUGGCCUCGUAAAAAGCCGCAAAAAAUAGCAUGUAGUACC
((((((((((((((.[[[[[[..))))).....]]]]]]........)))))...))))
×
CT File Formats
Start of first line: number of bases in the sequence
End of first line: title of the structure
Each of the following lines provides information about a given base in the sequence. Each base has its own line, with these elements in order:
Base number: index n
Base (A, C, G, T, U, X)
Index n-1
Index n+1
Number of the base to which n is paired. No pairing is indicated by 0 (zero)
Natural numbering
SAMPLE
5 sample
1 A 0 2 0 1
2 A 1 3 0 2
3 A 2 4 0 3
4 A 3 5 0 4
5 A 4 6 0 5