Transcript Detail IRES Map
Queried Transcript
| Transcript Info | Conservation | Conditional Translation Efficiency | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Accession | Genome Location |
Trascribed Gene |
5'UTR | CDS | Stop Codon | 3'UTR | Average Phastcon Score |
ER stressed | Normal |
ER/Normal Ratio |
| NM_001184892 | chr1: + (location) |
FLAD1 |
843 bps (seq) |
882 bps (seq) |
1726 ..1729 (TAA) |
98 bps (seq) |
0.356 | 0.119 | 0.117 |
1.017 (q = 1.000) |
Identified Putative IRES Elements
* indicates statistical significance:
(Thresholds
selected on a ground truth dataset)
1. Conservation Score q-value < 1.000E-6
2. RPI Score q-value < 1.000E-6.
3. Ratio (difference) q-value < 1.000E-6.
| IRES Info | Conservation |
Conditional
Translation Efficiency |
Translation Initiation-related Info Summary for the IRES | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Putative IRES | Identifying Tools |
Average Phastcon Score (ref) |
ER Stressed | Normal | ER/Normal Ratio (ref) |
# of eTIS
(ref) |
# of nTIS
(ref) |
# of uORF
(ref) |
# of ITAF Binding Events (ref) |
RPI Significance |
IRES activity (ref) |
# of Literature Evidence |
|
IRES 1 754..843 (seq) (location) |
UTRscan |
0.021
(q = 1.000) |
0.000 | 0.016 |
0.000 (q = 1.000) |
0 | 1 | 2 | 1 | q = 1.808E-26* | backgroundexpression | 0 |
IRES-Translation Initiation Interaction Map
(TIS refers to the main ORF initiating codon)
Detailed Translation Initiation-Related Data
Phastcon Conservation Scores (Among 19 Mammalian Species)
| Interconnected IRES |
Transcript Location |
Chromosomal Location |
Conservation Score |
|---|---|---|---|
| IRES 1 (754..843) | 754 | chr1 (+): 154987940 | 0.000 |
| IRES 1 (754..843) | 755 | chr1 (+): 154987941 | 0.002 |
| IRES 1 (754..843) | 756 | chr1 (+): 154987942 | 0.001 |
| IRES 1 (754..843) | 757 | chr1 (+): 154987943 | 0.000 |
| IRES 1 (754..843) | 758 | chr1 (+): 154987944 | 0.001 |
| IRES 1 (754..843) | 759 | chr1 (+): 154987945 | 0.004 |
| IRES 1 (754..843) | 760 | chr1 (+): 154987946 | 0.008 |
| IRES 1 (754..843) | 761 | chr1 (+): 154987947 | 0.009 |
| IRES 1 (754..843) | 762 | chr1 (+): 154987948 | 0.010 |
| IRES 1 (754..843) | 763 | chr1 (+): 154987949 | 0.007 |
| IRES 1 (754..843) | 764 | chr1 (+): 154987950 | 0.001 |
| IRES 1 (754..843) | 765 | chr1 (+): 154987951 | 0.001 |
| IRES 1 (754..843) | 766 | chr1 (+): 154987952 | 0.000 |
| IRES 1 (754..843) | 767 | chr1 (+): 154987953 | 0.001 |
| IRES 1 (754..843) | 768 | chr1 (+): 154987954 | 0.001 |
| IRES 1 (754..843) | 769 | chr1 (+): 154987955 | 0.000 |
| IRES 1 (754..843) | 770 | chr1 (+): 154987956 | 0.000 |
| IRES 1 (754..843) | 771 | chr1 (+): 154987957 | 0.000 |
| IRES 1 (754..843) | 772 | chr1 (+): 154987958 | 0.000 |
| IRES 1 (754..843) | 773 | chr1 (+): 154987959 | 0.000 |
| IRES 1 (754..843) | 774 | chr1 (+): 154987960 | 0.001 |
| IRES 1 (754..843) | 775 | chr1 (+): 154987961 | 0.005 |
| IRES 1 (754..843) | 776 | chr1 (+): 154987962 | 0.095 |
| IRES 1 (754..843) | 777 | chr1 (+): 154987963 | 0.104 |
| IRES 1 (754..843) | 778 | chr1 (+): 154987964 | 0.106 |
| IRES 1 (754..843) | 779 | chr1 (+): 154987965 | 0.097 |
| IRES 1 (754..843) | 780 | chr1 (+): 154987966 | 0.104 |
| IRES 1 (754..843) | 781 | chr1 (+): 154987967 | 0.100 |
| IRES 1 (754..843) | 782 | chr1 (+): 154987968 | 0.100 |
| IRES 1 (754..843) | 783 | chr1 (+): 154987969 | 0.123 |
| IRES 1 (754..843) | 784 | chr1 (+): 154987970 | 0.128 |
| IRES 1 (754..843) | 785 | chr1 (+): 154987971 | 0.123 |
| IRES 1 (754..843) | 786 | chr1 (+): 154987972 | 0.104 |
| IRES 1 (754..843) | 787 | chr1 (+): 154987973 | 0.060 |
| IRES 1 (754..843) | 788 | chr1 (+): 154987974 | 0.037 |
| IRES 1 (754..843) | 789 | chr1 (+): 154987975 | 0.023 |
| IRES 1 (754..843) | 790 | chr1 (+): 154987976 | 0.021 |
| IRES 1 (754..843) | 791 | chr1 (+): 154987977 | 0.021 |
| IRES 1 (754..843) | 792 | chr1 (+): 154987978 | 0.022 |
| IRES 1 (754..843) | 793 | chr1 (+): 154987979 | 0.026 |
| IRES 1 (754..843) | 794 | chr1 (+): 154987980 | 0.032 |
| IRES 1 (754..843) | 795 | chr1 (+): 154987981 | 0.033 |
| IRES 1 (754..843) | 796 | chr1 (+): 154987982 | 0.027 |
| IRES 1 (754..843) | 797 | chr1 (+): 154987983 | 0.025 |
| IRES 1 (754..843) | 798 | chr1 (+): 154987984 | 0.018 |
| IRES 1 (754..843) | 799 | chr1 (+): 154987985 | 0.004 |
| IRES 1 (754..843) | 800 | chr1 (+): 154987986 | 0.002 |
| IRES 1 (754..843) | 801 | chr1 (+): 154987987 | 0.004 |
| IRES 1 (754..843) | 802 | chr1 (+): 154987988 | 0.004 |
| IRES 1 (754..843) | 803 | chr1 (+): 154987989 | 0.001 |
| IRES 1 (754..843) | 804 | chr1 (+): 154987990 | 0.001 |
| IRES 1 (754..843) | 805 | chr1 (+): 154987991 | 0.000 |
| IRES 1 (754..843) | 806 | chr1 (+): 154987992 | 0.000 |
| IRES 1 (754..843) | 807 | chr1 (+): 154987993 | 0.001 |
| IRES 1 (754..843) | 808 | chr1 (+): 154987994 | 0.000 |
| IRES 1 (754..843) | 809 | chr1 (+): 154987995 | 0.001 |
| IRES 1 (754..843) | 810 | chr1 (+): 154987996 | 0.002 |
| IRES 1 (754..843) | 811 | chr1 (+): 154987997 | 0.003 |
| IRES 1 (754..843) | 812 | chr1 (+): 154987998 | 0.005 |
| IRES 1 (754..843) | 813 | chr1 (+): 154987999 | 0.015 |
| IRES 1 (754..843) | 814 | chr1 (+): 154988000 | 0.030 |
| IRES 1 (754..843) | 815 | chr1 (+): 154988001 | 0.035 |
| IRES 1 (754..843) | 816 | chr1 (+): 154988002 | 0.033 |
| IRES 1 (754..843) | 817 | chr1 (+): 154988003 | 0.022 |
| IRES 1 (754..843) | 818 | chr1 (+): 154988004 | 0.012 |
| IRES 1 (754..843) | 819 | chr1 (+): 154988005 | 0.022 |
| IRES 1 (754..843) | 820 | chr1 (+): 154988006 | 0.025 |
| IRES 1 (754..843) | 821 | chr1 (+): 154988007 | 0.024 |
| IRES 1 (754..843) | 822 | chr1 (+): 154988008 | 0.017 |
| IRES 1 (754..843) | 823 | chr1 (+): 154988009 | 0.012 |
| IRES 1 (754..843) | 824 | chr1 (+): 154988010 | 0.014 |
| IRES 1 (754..843) | 825 | chr1 (+): 154988011 | 0.012 |
| IRES 1 (754..843) | 826 | chr1 (+): 154988012 | 0.002 |
| IRES 1 (754..843) | 827 | chr1 (+): 154988013 | 0.000 |
| IRES 1 (754..843) | 828 | chr1 (+): 154988014 | 0.001 |
| IRES 1 (754..843) | 829 | chr1 (+): 154988015 | 0.001 |
| IRES 1 (754..843) | 830 | chr1 (+): 154988016 | 0.002 |
| IRES 1 (754..843) | 831 | chr1 (+): 154988017 | 0.004 |
| IRES 1 (754..843) | 832 | chr1 (+): 154988018 | 0.004 |
| IRES 1 (754..843) | 833 | chr1 (+): 154988019 | 0.004 |
| IRES 1 (754..843) | 834 | chr1 (+): 154988020 | 0.004 |
| IRES 1 (754..843) | 835 | chr1 (+): 154988021 | 0.002 |
| IRES 1 (754..843) | 836 | chr1 (+): 154988022 | 0.001 |
| IRES 1 (754..843) | 837 | chr1 (+): 154988023 | 0.001 |
| IRES 1 (754..843) | 838 | chr1 (+): 154988024 | 0.002 |
| IRES 1 (754..843) | 839 | chr1 (+): 154988025 | 0.004 |
| IRES 1 (754..843) | 840 | chr1 (+): 154988026 | 0.003 |
| IRES 1 (754..843) | 841 | chr1 (+): 154988027 | 0.002 |
| IRES 1 (754..843) | 842 | chr1 (+): 154988028 | 0.004 |
| IRES 1 (754..843) | 843 | chr1 (+): 154988029 | 0.006 |
Potential IRES Structural Form
IRES 1
(754.. 843)
Best Predicted IRES Structural Form:
.((((((....(((....)))...)))))).(((((((((....)))))).)))..(((.....((((((....)))).))...)))...
Predicted by: locaRNA
Structural RPI Interpretability Significance: q = 1.808E-26*
(Visualization)
Conditional Translation Activity
ER-Stressed Ribisome Profiling (TM-treated)
| Interconnected IRES |
Transcript Location |
Chromosomal Location |
Stressed Translation Activity |
|---|---|---|---|
| IRES 1 (754..843) | 754 | chr1 (+): 154987940 | 0 |
| IRES 1 (754..843) | 755 | chr1 (+): 154987941 | 0 |
| IRES 1 (754..843) | 756 | chr1 (+): 154987942 | 0 |
| IRES 1 (754..843) | 757 | chr1 (+): 154987943 | 0 |
| IRES 1 (754..843) | 758 | chr1 (+): 154987944 | 0 |
| IRES 1 (754..843) | 759 | chr1 (+): 154987945 | 0 |
| IRES 1 (754..843) | 760 | chr1 (+): 154987946 | 0 |
| IRES 1 (754..843) | 761 | chr1 (+): 154987947 | 0 |
| IRES 1 (754..843) | 762 | chr1 (+): 154987948 | 0 |
| IRES 1 (754..843) | 763 | chr1 (+): 154987949 | 0 |
| IRES 1 (754..843) | 764 | chr1 (+): 154987950 | 0 |
| IRES 1 (754..843) | 765 | chr1 (+): 154987951 | 0 |
| IRES 1 (754..843) | 766 | chr1 (+): 154987952 | 0 |
| IRES 1 (754..843) | 767 | chr1 (+): 154987953 | 0 |
| IRES 1 (754..843) | 768 | chr1 (+): 154987954 | 0 |
| IRES 1 (754..843) | 769 | chr1 (+): 154987955 | 0 |
| IRES 1 (754..843) | 770 | chr1 (+): 154987956 | 0 |
| IRES 1 (754..843) | 771 | chr1 (+): 154987957 | 0 |
| IRES 1 (754..843) | 772 | chr1 (+): 154987958 | 0 |
| IRES 1 (754..843) | 773 | chr1 (+): 154987959 | 0 |
| IRES 1 (754..843) | 774 | chr1 (+): 154987960 | 0 |
| IRES 1 (754..843) | 775 | chr1 (+): 154987961 | 0 |
| IRES 1 (754..843) | 776 | chr1 (+): 154987962 | 0 |
| IRES 1 (754..843) | 777 | chr1 (+): 154987963 | 0 |
| IRES 1 (754..843) | 778 | chr1 (+): 154987964 | 0 |
| IRES 1 (754..843) | 779 | chr1 (+): 154987965 | 0 |
| IRES 1 (754..843) | 780 | chr1 (+): 154987966 | 0 |
| IRES 1 (754..843) | 781 | chr1 (+): 154987967 | 0 |
| IRES 1 (754..843) | 782 | chr1 (+): 154987968 | 0 |
| IRES 1 (754..843) | 783 | chr1 (+): 154987969 | 0 |
| IRES 1 (754..843) | 784 | chr1 (+): 154987970 | 0 |
| IRES 1 (754..843) | 785 | chr1 (+): 154987971 | 0 |
| IRES 1 (754..843) | 786 | chr1 (+): 154987972 | 0 |
| IRES 1 (754..843) | 787 | chr1 (+): 154987973 | 0 |
| IRES 1 (754..843) | 788 | chr1 (+): 154987974 | 0 |
| IRES 1 (754..843) | 789 | chr1 (+): 154987975 | 0 |
| IRES 1 (754..843) | 790 | chr1 (+): 154987976 | 0 |
| IRES 1 (754..843) | 791 | chr1 (+): 154987977 | 0 |
| IRES 1 (754..843) | 792 | chr1 (+): 154987978 | 0 |
| IRES 1 (754..843) | 793 | chr1 (+): 154987979 | 0 |
| IRES 1 (754..843) | 794 | chr1 (+): 154987980 | 0 |
| IRES 1 (754..843) | 795 | chr1 (+): 154987981 | 0 |
| IRES 1 (754..843) | 796 | chr1 (+): 154987982 | 0 |
| IRES 1 (754..843) | 797 | chr1 (+): 154987983 | 0 |
| IRES 1 (754..843) | 798 | chr1 (+): 154987984 | 0 |
| IRES 1 (754..843) | 799 | chr1 (+): 154987985 | 0 |
| IRES 1 (754..843) | 800 | chr1 (+): 154987986 | 0 |
| IRES 1 (754..843) | 801 | chr1 (+): 154987987 | 0 |
| IRES 1 (754..843) | 802 | chr1 (+): 154987988 | 0 |
| IRES 1 (754..843) | 803 | chr1 (+): 154987989 | 0 |
| IRES 1 (754..843) | 804 | chr1 (+): 154987990 | 0 |
| IRES 1 (754..843) | 805 | chr1 (+): 154987991 | 0 |
| IRES 1 (754..843) | 806 | chr1 (+): 154987992 | 0 |
| IRES 1 (754..843) | 807 | chr1 (+): 154987993 | 0 |
| IRES 1 (754..843) | 808 | chr1 (+): 154987994 | 0 |
| IRES 1 (754..843) | 809 | chr1 (+): 154987995 | 0 |
| IRES 1 (754..843) | 810 | chr1 (+): 154987996 | 0 |
| IRES 1 (754..843) | 811 | chr1 (+): 154987997 | 0 |
| IRES 1 (754..843) | 812 | chr1 (+): 154987998 | 0 |
| IRES 1 (754..843) | 813 | chr1 (+): 154987999 | 0 |
| IRES 1 (754..843) | 814 | chr1 (+): 154988000 | 0 |
| IRES 1 (754..843) | 815 | chr1 (+): 154988001 | 0 |
| IRES 1 (754..843) | 816 | chr1 (+): 154988002 | 0 |
| IRES 1 (754..843) | 817 | chr1 (+): 154988003 | 0 |
| IRES 1 (754..843) | 818 | chr1 (+): 154988004 | 0 |
| IRES 1 (754..843) | 819 | chr1 (+): 154988005 | 0 |
| IRES 1 (754..843) | 820 | chr1 (+): 154988006 | 0 |
| IRES 1 (754..843) | 821 | chr1 (+): 154988007 | 0 |
| IRES 1 (754..843) | 822 | chr1 (+): 154988008 | 0 |
| IRES 1 (754..843) | 823 | chr1 (+): 154988009 | 0 |
| IRES 1 (754..843) | 824 | chr1 (+): 154988010 | 0 |
| IRES 1 (754..843) | 825 | chr1 (+): 154988011 | 0 |
| IRES 1 (754..843) | 826 | chr1 (+): 154988012 | 0 |
| IRES 1 (754..843) | 827 | chr1 (+): 154988013 | 0 |
| IRES 1 (754..843) | 828 | chr1 (+): 154988014 | 0 |
| IRES 1 (754..843) | 829 | chr1 (+): 154988015 | 0 |
| IRES 1 (754..843) | 830 | chr1 (+): 154988016 | 0 |
| IRES 1 (754..843) | 831 | chr1 (+): 154988017 | 0 |
| IRES 1 (754..843) | 832 | chr1 (+): 154988018 | 0 |
| IRES 1 (754..843) | 833 | chr1 (+): 154988019 | 0 |
| IRES 1 (754..843) | 834 | chr1 (+): 154988020 | 0 |
| IRES 1 (754..843) | 835 | chr1 (+): 154988021 | 0 |
| IRES 1 (754..843) | 836 | chr1 (+): 154988022 | 0 |
| IRES 1 (754..843) | 837 | chr1 (+): 154988023 | 0 |
| IRES 1 (754..843) | 838 | chr1 (+): 154988024 | 0 |
| IRES 1 (754..843) | 839 | chr1 (+): 154988025 | 0 |
| IRES 1 (754..843) | 840 | chr1 (+): 154988026 | 0 |
| IRES 1 (754..843) | 841 | chr1 (+): 154988027 | 0 |
| IRES 1 (754..843) | 842 | chr1 (+): 154988028 | 0 |
| IRES 1 (754..843) | 843 | chr1 (+): 154988029 | 0 |
Normal Ribisome Profiling (TM-untreaed)
| Interconnected IRES |
Transcript Location |
Chromosomal Location |
Normal Translation Activity |
|---|---|---|---|
| IRES 1 (754..843) | 754 | chr1 (+): 154987940 | 0.0357428544672 |
| IRES 1 (754..843) | 755 | chr1 (+): 154987941 | 0.0357428544672 |
| IRES 1 (754..843) | 756 | chr1 (+): 154987942 | 0.0357428544672 |
| IRES 1 (754..843) | 757 | chr1 (+): 154987943 | 0.0357428544672 |
| IRES 1 (754..843) | 758 | chr1 (+): 154987944 | 0.0357428544672 |
| IRES 1 (754..843) | 759 | chr1 (+): 154987945 | 0.0357428544672 |
| IRES 1 (754..843) | 760 | chr1 (+): 154987946 | 0.0357428544672 |
| IRES 1 (754..843) | 761 | chr1 (+): 154987947 | 0.0357428544672 |
| IRES 1 (754..843) | 762 | chr1 (+): 154987948 | 0.0357428544672 |
| IRES 1 (754..843) | 763 | chr1 (+): 154987949 | 0.0357428544672 |
| IRES 1 (754..843) | 764 | chr1 (+): 154987950 | 0.0357428544672 |
| IRES 1 (754..843) | 765 | chr1 (+): 154987951 | 0.0357428544672 |
| IRES 1 (754..843) | 766 | chr1 (+): 154987952 | 0.0357428544672 |
| IRES 1 (754..843) | 767 | chr1 (+): 154987953 | 0.0357428544672 |
| IRES 1 (754..843) | 768 | chr1 (+): 154987954 | 0.0357428544672 |
| IRES 1 (754..843) | 769 | chr1 (+): 154987955 | 0.0357428544672 |
| IRES 1 (754..843) | 770 | chr1 (+): 154987956 | 0.0357428544672 |
| IRES 1 (754..843) | 771 | chr1 (+): 154987957 | 0.0357428544672 |
| IRES 1 (754..843) | 772 | chr1 (+): 154987958 | 0.0357428544672 |
| IRES 1 (754..843) | 773 | chr1 (+): 154987959 | 0.0357428544672 |
| IRES 1 (754..843) | 774 | chr1 (+): 154987960 | 0.0357428544672 |
| IRES 1 (754..843) | 775 | chr1 (+): 154987961 | 0.0357428544672 |
| IRES 1 (754..843) | 776 | chr1 (+): 154987962 | 0.0357428544672 |
| IRES 1 (754..843) | 777 | chr1 (+): 154987963 | 0.0357428544672 |
| IRES 1 (754..843) | 778 | chr1 (+): 154987964 | 0.0357428544672 |
| IRES 1 (754..843) | 779 | chr1 (+): 154987965 | 0.0357428544672 |
| IRES 1 (754..843) | 780 | chr1 (+): 154987966 | 0.0357428544672 |
| IRES 1 (754..843) | 781 | chr1 (+): 154987967 | 0 |
| IRES 1 (754..843) | 782 | chr1 (+): 154987968 | 0 |
| IRES 1 (754..843) | 783 | chr1 (+): 154987969 | 0 |
| IRES 1 (754..843) | 784 | chr1 (+): 154987970 | 0 |
| IRES 1 (754..843) | 785 | chr1 (+): 154987971 | 0 |
| IRES 1 (754..843) | 786 | chr1 (+): 154987972 | 0 |
| IRES 1 (754..843) | 787 | chr1 (+): 154987973 | 0 |
| IRES 1 (754..843) | 788 | chr1 (+): 154987974 | 0 |
| IRES 1 (754..843) | 789 | chr1 (+): 154987975 | 0 |
| IRES 1 (754..843) | 790 | chr1 (+): 154987976 | 0 |
| IRES 1 (754..843) | 791 | chr1 (+): 154987977 | 0 |
| IRES 1 (754..843) | 792 | chr1 (+): 154987978 | 0 |
| IRES 1 (754..843) | 793 | chr1 (+): 154987979 | 0 |
| IRES 1 (754..843) | 794 | chr1 (+): 154987980 | 0 |
| IRES 1 (754..843) | 795 | chr1 (+): 154987981 | 0 |
| IRES 1 (754..843) | 796 | chr1 (+): 154987982 | 0 |
| IRES 1 (754..843) | 797 | chr1 (+): 154987983 | 0 |
| IRES 1 (754..843) | 798 | chr1 (+): 154987984 | 0 |
| IRES 1 (754..843) | 799 | chr1 (+): 154987985 | 0 |
| IRES 1 (754..843) | 800 | chr1 (+): 154987986 | 0 |
| IRES 1 (754..843) | 801 | chr1 (+): 154987987 | 0 |
| IRES 1 (754..843) | 802 | chr1 (+): 154987988 | 0 |
| IRES 1 (754..843) | 803 | chr1 (+): 154987989 | 0 |
| IRES 1 (754..843) | 804 | chr1 (+): 154987990 | 0 |
| IRES 1 (754..843) | 805 | chr1 (+): 154987991 | 0 |
| IRES 1 (754..843) | 806 | chr1 (+): 154987992 | 0 |
| IRES 1 (754..843) | 807 | chr1 (+): 154987993 | 0 |
| IRES 1 (754..843) | 808 | chr1 (+): 154987994 | 0 |
| IRES 1 (754..843) | 809 | chr1 (+): 154987995 | 0 |
| IRES 1 (754..843) | 810 | chr1 (+): 154987996 | 0 |
| IRES 1 (754..843) | 811 | chr1 (+): 154987997 | 0 |
| IRES 1 (754..843) | 812 | chr1 (+): 154987998 | 0 |
| IRES 1 (754..843) | 813 | chr1 (+): 154987999 | 0 |
| IRES 1 (754..843) | 814 | chr1 (+): 154988000 | 0 |
| IRES 1 (754..843) | 815 | chr1 (+): 154988001 | 0 |
| IRES 1 (754..843) | 816 | chr1 (+): 154988002 | 0 |
| IRES 1 (754..843) | 817 | chr1 (+): 154988003 | 0 |
| IRES 1 (754..843) | 818 | chr1 (+): 154988004 | 0 |
| IRES 1 (754..843) | 819 | chr1 (+): 154988005 | 0 |
| IRES 1 (754..843) | 820 | chr1 (+): 154988006 | 0 |
| IRES 1 (754..843) | 821 | chr1 (+): 154988007 | 0 |
| IRES 1 (754..843) | 822 | chr1 (+): 154988008 | 0 |
| IRES 1 (754..843) | 823 | chr1 (+): 154988009 | 0 |
| IRES 1 (754..843) | 824 | chr1 (+): 154988010 | 0 |
| IRES 1 (754..843) | 825 | chr1 (+): 154988011 | 0 |
| IRES 1 (754..843) | 826 | chr1 (+): 154988012 | 0 |
| IRES 1 (754..843) | 827 | chr1 (+): 154988013 | 0 |
| IRES 1 (754..843) | 828 | chr1 (+): 154988014 | 0 |
| IRES 1 (754..843) | 829 | chr1 (+): 154988015 | 0 |
| IRES 1 (754..843) | 830 | chr1 (+): 154988016 | 0 |
| IRES 1 (754..843) | 831 | chr1 (+): 154988017 | 0.0357428544672 |
| IRES 1 (754..843) | 832 | chr1 (+): 154988018 | 0.0357428544672 |
| IRES 1 (754..843) | 833 | chr1 (+): 154988019 | 0.0357428544672 |
| IRES 1 (754..843) | 834 | chr1 (+): 154988020 | 0.0357428544672 |
| IRES 1 (754..843) | 835 | chr1 (+): 154988021 | 0.0357428544672 |
| IRES 1 (754..843) | 836 | chr1 (+): 154988022 | 0.0357428544672 |
| IRES 1 (754..843) | 837 | chr1 (+): 154988023 | 0.0357428544672 |
| IRES 1 (754..843) | 838 | chr1 (+): 154988024 | 0.0357428544672 |
| IRES 1 (754..843) | 839 | chr1 (+): 154988025 | 0.0357428544672 |
| IRES 1 (754..843) | 840 | chr1 (+): 154988026 | 0.0357428544672 |
| IRES 1 (754..843) | 841 | chr1 (+): 154988027 | 0.0357428544672 |
| IRES 1 (754..843) | 842 | chr1 (+): 154988028 | 0.0357428544672 |
| IRES 1 (754..843) | 843 | chr1 (+): 154988029 | 0.0357428544672 |
Experimentally-Probed TIS (eTIS)
| Interconnected IRES | TIS Transcript Location |
TIS Chromosomal Location |
Codon |
|---|
Predicted Non-canonical TIS (nTIS)
| Interconnected IRES | TIS Transcript Location |
TIS Chromosomal Location |
Non-canonical Start Codon |
Confidence |
|---|---|---|---|---|
| IRES 1 (754..843) | 754..756 |
chr1 (+) : 154987940 - 154987942. |
AUG | 1 |
uORF
| Interconnected IRES |
uORF Transcript Location |
uORF Chromosomal Location |
uORF Sequence | Sequence |
|---|---|---|---|---|
| IRES 1 (754..843) | 611..691 |
chr1 (+) : 154987797 - 154987877. |
81 bps (seq) | AUGUGGUGGCACGCGCCUGUAGUCCCAGCUACUCGGAAGGCUGGGGUGGCCCUUGAAGCCAGGAGGUUGAGGCUGCAGUGA |
| IRES 1 (754..843) | 754..801 |
chr1 (+) : 154987940 - 154987987. |
48 bps (seq) | AUGGAUUUUCCCACUCUUGUGUCCAGUCCAGGCCCCUCAGCAGCCUGA |
ITAF Binding Events
| Interconnected IRES |
ITAF Type | ITAF Transcript Location |
ITAF Chromosomal Location |
ITAF Sequence |
Sequence | Identified Score |
|---|---|---|---|---|---|---|
| IRES 1 (754..843) | eIF4A3 (HITS CLIP, Hela cells replicate 1) | 796..825 |
chr1 (+) : 154987982 - 154988011. |
30 bps (seq) | GCCUGAGGUGGUGUCCUUCAAAGAGCAGAG | 2 |
IRES Activity Measurements
| Interconnected IRES |
IRES Activity |
Promoter Activity |
Splicing Activity |
Matched Transcript Location |
Matched Transcript Sequence | Matched Chromosomal Location |
Designed Human Oligo Sequence |
Designed Oligo Sequence | BLASTN Query Cover |
BLASTN Percent Identity |
|---|---|---|---|---|---|---|---|---|---|---|
| IRES 1 (754..843) | backgroundexpression | 0 | NaN | 670..843 (seq) | CAGGAGGTTGAGGCTGCAGTGAACTGTGACTGAGCCACTATACTCCAGCCTGGGTGACAGAGACCCAGCTTTAAAACCAAACAAATGGATTTTCCCACTCTTGTGTCCAGTCCAGGCCCCTCAGCAGCCTGAGGTGGTGTCCTTCAAAGAGCAGAGCACTGCATCATCAGGTGG |
chr1 (+) : 154987856 - 154988029. |
174 nts (seq) | CAGGAGGTTGAGGCTGCAGTGAACTGTGACTGAGCCACTATACTCCAGCCTGGGTGACAGAGACCCAGCTTTAAAACCAAACAAATGGATTTTCCCACTCTTGTGTCCAGTCCAGGCCCCTCAGCAGCCTGAGGTGGTGTCCTTCAAAGAGCAGAGCACTGCATCATCAGGTGG | 100.00% | 100.00% |
IRES Elements Verified in the Literature
| Interconnected IRES |
Matched Transcript Location |
Matched Transcript Sequence | Matched Chromosomal Location |
Literature Verified Sequence |
Verified Sequence | BLASTN Query Cover |
BLASTN Percent Identity |
Reference |
|---|
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